Selected publications
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Carrillo-Perez, F., Pizurica, M., Zheng, Y., Nandi, T.N., Madduri, R., Shen, J., and Gevaert, O. (2024)
Generation of synthetic whole-slide image tiles of tumours from RNA-sequencing data via cascaded diffusion models.
Nature Biomedical Engineering, https://doi.org/10.1038/s41551-024-01193-8
[Paper,
Code]
Pizurica, M., Zheng, Y., Carrillo-Perez, F., Noor, H., Yao, W., Wohlfart, C., Vladimirova, A., Marchal, K. and Gevaert, O. (2024)
Digital profiling of gene expression from histology images with linearized attention.
Nature Communications, https://doi.org/10.1038/s41467-024-54182-5
[Paper,
Code]
Carrillo-Perez, F., Pizurica, M., Ozawa, M., Vogel, H., West, R., Kong, C., Herrera, L.J., Shen, J., Gevaert, O. (2023)
Synthetic whole-slide image tile generation with gene expression profile-infused deep generative models.
Cell Reports Methods, https://doi.org/10.1016/j.crmeth.2023.100534
[Paper,
Code]
Carrillo-Perez, F., Morales JC, Castillo-Secilla D, Gevaert O, Rojas I, Herrera LJ. (2022)
Machine-Learning-Based Late Fusion on Multi-Omics and Multi-Scale Data for Non-Small-Cell Lung Cancer Diagnosis.
Journal of Personalized Medicine, 12(4), 601, https://doi.org/10.3390/jpm12040601
[Paper,
Code]
Carrillo-Perez, F., Morales, J. C., Castillo-Secilla, D., Molina-Castro, Y., Guillén, A., Rojas, I., & Herrera, L. J. (2021)
Non-small-cell lung cancer classification via RNA-Seq and histology imaging probability fusion.
BMC Bioinformatics, 22(1), 1-19, https://doi.org/10.1186/s12859-021-04376-1
[Paper,
Code]